Deep learning: Deep learning has recently been at the forefront of artificial intelligence (AI) research and has truly revolutionized several fields of AI. Data Science Group members are
actively involved in developing methods that can help us both better understand the limitations of existing deep learning approaches and also improve various aspects of their performance. They have worked on a wide variety of topics from this area, exploring both fundamental questions and practical applications. This includes, to mention a few of these topics, exploring and proposing novel deep network architectures, developing new ways of effectively transferring knowledge between networks, revisiting weight parameterizations for deep networks in order to improve their generalization capabilities, proposing novel self-supervised and few-shot learning methods, devising and applying learning approaches that advance the state-of-the-art for fundamental problems from the areas of computer vision and image analysis, making use of attention in the context of knowledge distillation, proposing hybrid (scattering-based) convolutional network architectures that allow for better representation learning and more interpretable features, as well as properly adapting deep neural networks such that they can be applied to arbitrary graph-structured data directly and can also handle structured-prediction tasks.

Neural-based Speech Synthesis – Deep Learning in Speech Processing: Deep Neural Networks have taken the engineering community by storm. Data-rich areas such as image processing and speech processing have been transformed during the last years. The Data Science Group combines its expertise on speech processing and applies deep learning techniques to applications such as voice conversion, speech synthesis and speech enhancement.

Generative Adversarial Nets – Deep Generative Learning:  Generative models based on Deep Neural Nets have shown unprecedented capabilities in sampling data from complex but
unknown distributions. Researchers in the Data Science Group develop novel algorithms for training generative models, focusing on Generative Adversarial Networks (GANs). GANs have been used in data augmentation schemes to generate synthetic data that follow the same distributional characteristics as the original dataset (which may contain sensitive information or limited number of cases). The proposed methodology has been applied to identify dyslexia in children, using measurements from specialized eye trackers.

Space-time models: Data Science Group members are actively involved in the development of Bayesian and frequentist models for spatio-temporal data, including models with spatially varying coefficients. Conditional autoregressive priors, Moran’s eigenvector filtering, dimension reduction algorithms, penalized LASSO-type estimates and bootstrap-based uncertainty quantification are among the methodological tools that are used to estimate parameters and conduct inference on such models. Typical applications of space-time models in Geosciences include a) the evaluation of outputs from Regional Climate Models and b) the analysis of time series of remotely sensed imagery. Similar models have been developed to analyze the dynamics of regional economic variables.

Incident/Anomaly Detection: Group members develop real-time algorithms for incident/anomaly detection, focusing mostly on network activity (e.g. vehicular networks). Decision trees and (nonparametric) quantile regressions are among the methodological tools that have been employed as key components of such algorithms. Typical applications include incident detection on vehicular networks based on loop detector data, fraud detection in bank transactions, etc.

Functional Data Analysis: Functional data analysis (FDA) focuses on data that can be curves, surfaces or anything else varying over a continuum. For instance, plasma thermograms are curves associated with a person’s health status; a group of such curves can be analyzed using FDA-analogues of conventional statistical procedures. The Data Science group develops segment-wise supervised classification schemes for multivariate functional data, which may reject noisy domains of the functional data and assign larger weights to segments that contain useful information for the classification groups of each study. A typical application of the proposed algorithms is disease identification/diagnosis.

Forecasting Multivariate Time Series: The group’s activities include research on linear (ARIMA) and nonlinear (smooth-transition or threshold autoregressions) parametric time series models that are estimated using a) fast penalized LASSO-type estimators or, b) Bayesian posteriors based on shrinkage priors (e.g. horseshoe). Such models are used in (real-time) forecasting applications, including for example, short-term forecasts of a) vehicular counts in a transportation network, b) energy outputs from wind- or solar-panel farms and c) emissions from heavy-duty diesel engines.

Statistical Analysis of Transportation Emissions: The group’s activity emphasizes predictive modeling of high-frequency emissions rates from real-world experiments, similar to the ones conducted to define European and US emissions standards. Such models typically focus on pollutants which are hard to measure, such as particle numbers (PN). The implemented methodology a) combines parametric nonlinear time series models with robust quantile regressions for vehicle-specific predictions, and b) estimates multi-level specifications to compute predictions for homogeneous families of vehicles.

Predictive Models in Biomedical Engineering and Epidemiology: The group’s activities include a) predictive modeling for heart volumes which are used to perform virtual heart transplants, b) spatial statistical specifications for the growth of thrombus in abdominal aortic aneurysms, c) nonparametric functional classifiers for disease identification and d) spatio-temporal models for epidemics.

Space-time Econometrics: Data
Science group members constructed space-time models which aim to explain the dynamics of regional productivity in the EU. Currently, our group develops spatial and spatiotemporal models for the adoption of agricultural innovation in the US.

Sparse Inference in Dynamical Systems: The Data Science group members develop methods and algorithms for learning the structure and the parameters of sparse dynamical systems from temporal measurements. Sparsity means that the dynamics of each state variable are typically driven by a relatively small number of variables. Sparsity is critical for learning large systems from finite data and constitutes a form of complexity penalization and regularization thus favoring simpler solutions. Applications include but are not limited to biological networks of proteins, neuroscience, physics and finance.

Bayesian Networks: Bayesian networks, a special case of directed acyclic graphs, are frequently employed for modelling domain knowledge in Decision Support Systems, particularly in medicine. Researchers from the Data Science Group develop algorithms for Bayesian network structure learning, which can be used to automatically construct Decision Support Systems.

Feature Selection for Big and High-Dimensional Data: Feature (also called variable) selection for regression and classification, is an essential problem that has been given considerable attention during the last three decades. Specifically, feature selection is critical in order to construct models which possess a) satisfactory predictive capability and b) interpretable structure. The Data Science Group designs feature-selection algorithms that can be utilized in challenging applications that analyze Big data, in which the number of features may be larger than the number of cases (which can be in the order of millions).  The developed algorithms can be implemented in numerous and diverse research domains; a typical application is the analysis of SNP data (Bioinformatics).

Uncertainty Quantification in Stochastic Systems and Multilevel Models: Uncertainty quantification (UQ) is essential for the reliable and robust modelling of complex stochastic dynamics. The Data Science Group develops novel information-theoretic tools to address the challenges concerning the feasibility and efficiency of UQ in stochastic systems, which were used to analyze biological reaction networks. Furthermore, the Data Science group members conduct research on computationally intensive methods (e.g. bootstrap-based confidence intervals) for uncertainty quantification in models that capture nested data structures (multilevel models for categorical responses).

Parametric Sensitivity Analysis in Biochemical Reaction Networks: Data Science group members have developed parametric sensitivity analysis tools as an approach to mathematically and computationally understand and evaluate the behavior of complex phenomena in biochemical reaction networks.

Mathematics of information: Information is a core notion in many engineering and scientific disciplines. For example, much of modern statistics may be characterised as the process of extracting information from data. Over the past 60 years, information, along with its mathematical description via the Boltzmann-Shannon entropy, have played a crucial role in science and technology, both as a central metaphors providing intellectual guidelines, as well as a mathematically specific, technical, and precisely measurable quantities. Members of the Data Science group have been exploring the development of rigorous tools for the mathematical description of information, as well as the analysis of practical questions arising in a variety of applications, ranging from moder digital communications networks to finance, neuroscience and bioinformatics.

Compositional Data Analysis: Compositional data are met in many different fields, such as economics, archaeometry, ecology, geology and political sciences. Researchers from the Data Science Group have worked on the improvement of existing predictive models (e.g. regression and classification) for compositional data, which can be seen as vectors of proportions that sum to one.

Heart Rate Estimation: Estimation of hazard rates is important in research areas such as reliability and survival analysis. The classical method of estimation involves modelling the failure times by appropriate probability distributions such as exponential, gamma, Weibull, etc. The Data Science Group focuses on nonparametric kernel methods, which are flexible as they are not based on distributional assumptions.

Supervised and Unsupervised Modeling: Researchers from the Data Science Group participate in projects that require the design, implementation, validation and deployment of a predictive model. Applications are diverse, including energy production forecasting for wind farms, outbreak forecasting, Raman spectroscopy, materials’ properties prediction and more.

The group organizes a Journal Club on AI at FORTH.

The group contributes to the education and training of undergraduate, graduate and post-graduate students as well as of PhD candidates and Postdoctoral researchers.

Further, the group contributes to the Postgraduate Program “Data Analysis & Machine-Statistical Learning” at the University of Crete. Members of the Data Science group participate in the above program as instructors and mentors.

• S Afzali, S Della Corte, A Papapantoleon (2026) Shapley-based Structural Analysis of Neural Calibration for Stochastic Volatility Models, arXiv preprint arXiv:2610.03076
• G Aletras, M Bachlitzanaki, S Fiflis, E Bachlitzanaki, E Eleftheriadou, Y Pantazis, E Foukarakis, M Hamilos, K Stylianou (2026) Sex Differences in Clinical Phenotypes and Prognostic Associations in Acute Heart Failure, Front. Cardiovasc. Med., Sec. Sex and Gender in Cardiovascular Medicine.
• G Aletras, M Bachlitzanaki, M Stratinaki, E Foukarakis, I Petrakis, Y Pantazis, M Hamilos, K Stylianou (2026) Diuretic Resistance in Cardiorenal Syndrome: Mechanisms, Monitoring and Phenotype-Tailored Management, Frontiers in Cardiovascular Medicine, https://pubmed.ncbi.nlm.nih.gov/41561121/
• G Aletras, M Bachlitzanaki, M Stratinaki, T Georgopoulou, Y Pantazis, E Foukarakis, M Hamilos, K Stylianou (2026) Admission cardiorenal determinants of mid-term outcomes in acute heart failure, European Journal of Heart Failure 28 (Supplement_2), xuag193.855, https://doi.org/10.1093/ejhf/xuag193.855
• G Aletras, M Bachlitzanaki, M Stratinaki, E Lamprogiannakis, E Foukarakis, Y Pantazis, M Hamilos, K Stylianou (2026) Clinical phenotypes and mid-term outcomes according to precipitating factors of acute heart failure, European Journal of Heart Failure 28 (Supplement_2), xuag193.1001, https://doi.org/10.1093/ejhf/xuag193.1001
• G Aletras, M Bachlitzanaki, M Stratinaki, E Lamprogiannakis, Y Pantazis, M Hamilos, K Stylianou, E Foukarakis (2026) Early clues to long-term outcomes: predicting 180-day mortality in acute heart failure, European Journal of Preventive Cardiology 33 (Supplement_2), zwag249.057, https://doi.org/10.1093/eurjpc/zwag249.057
• G Aletras, M Bachlitzanaki, M Stratinaki, I Petrakis, Y Pantazis, E Foukarakis, M Hamilos, K Stylianou (2026) Acute Kidney Injury in Acute Heart Failure Revisited: Marker of Cardiorenal Disease Severity Rather Than Isolated Renal Injury, Life 16 (3), 486, https://doi.org/10.3390/life16030486
• G Aletras, S Fiflis, T Georgopoulou, G Halkiadaki, Y Pantazis, K Stylianou, M Hamilos, E Foukarakis (2026) Multivalvular Involvement in Acute Heart Failure: Associations with One-Year Outcomes and the Right-Heart Phenotype, Medical Sciences 14 (5), 564, https://www.mdpi.com/2076-3271/14/5/564
• G Aletras, M Marketou, M Bachlitzanaki, M Stratinaki, M Tsigaridaki, Y Pantazis, E Foukarakis, M Hamilos, K Stylianou (2026) Beyond Cardiorenal Risk Factors: The Prognostic Role of Frailty in Acute Heart Failure, Medicina 62 (10), 1942.
• G Aletras, K Stylianou, M Marketou, M Stratinaki, A Papayiannaki, Y Pantazis, M Hamilos, E Foukarakis (2026) Two Phenotypes, One Prognosis: Period-Specific Mortality and Prediction of Post-Discharge Events in Acute Heart Failure, Journal of Cardiovascular Development and Disease 13(9), 423, https://doi.org/10.3390/jcdd13090423
• G Arampatzis, A Arampatzis (2026) Multilingual Humour-Aware Retrieval with Dense and Re-Ranking Models, arXiv preprint arXiv:2605.25165
• T Aravanis, V Stojnić, B Psomas, N Komodakis, G Tolias (2026) Retrieve and Segment: Are a Few Examples Enough to Bridge the Supervision Gap in Open-Vocabulary Segmentation?, arXiv preprint arXiv:2602.23339
• K Biza, S Triantafillou, I Tsamardinos (2026) An AutoML-Powered Architecture for Causal Discovery, The 13th International Conference on Probabilistic Graphical Models, https://openreview.net/pdf?id=GjX3fo6Ff0
• S Della Corte, L Van Mieghem, A Papapantoleon, J Papazoglou-Hennig (2026) Machine learning for option pricing: an empirical investigation of network architectures, The European Journal of Finance, 1-31, https://doi.org/10.1080/1351847X.2026.2667910
• A Chatzimentor, A Doxa, S Katsanevakis, AD Mazaris (2026) Future climate change favours the increase in abundance of smaller, shorter‐lived fish in the northeastern Mediterranean, Functional Ecology, DOI: 10.1111/1365-2435.70417
• YC Cheng, H Gu, TO McDonald, W Wu, S Tripathi, C Guarducci, D Russo, DL Abravanel, M Bailey, Y Wang, Y Zhang, Y Pantazis, H Levine, R Jeselsohn, MA Katsoulakis, F Michor (2026) PROFET predicts continuous gene expression dynamics from scRNA-seq data to elucidate heterogeneity of cancer treatment responses, https://www.sciencedirect.com/science/article/pii/S2405471226001924
• E.H. Georgoulis, A. Papapantoleon, C. Smaragdakis (2026) A deep implicit-explicit minimizing movement method for partial integro-differential equations, with application to option pricing in jump-diffusion models, Communications in Nonlinear Science and Numerical Simulation, Vol. 156, 109709, https://doi.org/10.1016/j.cnsns.2026.109709
• E Karypidis, S Gidaris, N Komodakis (2026) Representations Before Pixels: Semantics-Guided Hierarchical Video Prediction, arXiv preprint arXiv:2604.11707
• E Karypidis, S Gidaris, N Komodakis (2026) Latent-Foresight: End-to-End Learning Predictable Representations for Latent World Models, arXiv preprint arXiv:2610.01942
• A Kofidis, Ε Dretaki, M Zotou, D Poursanidis, A Doxa, AD Mazaris, S Katsanevakis, Y Kamarianakis, Y Pantazis (2026) High-Accuracy Fish Species Identification Using Transfer Learning on Vision Foundation Models, Frontiers in Marine Science (abstract)
• N Kougioulis, N Gkorgkolis, MX Wang, B Caglayan, D Simionato, A Tonon, I Tsamardinos (2026) Large Causal Models for Temporal Causal Discovery, arXiv preprint arXiv:2602.18662
• T Kouzelis, S Gidaris, N Komodakis (2026) Coevolving Representations in Joint Image-Feature Diffusion, arXiv preprint arXiv:2604.17492
• K Lelova, GF Cooper, S Triantafillou (2026) Transportability Without Graphs: A Bayesian Approach to Identifying s-Admissible Backdoor Sets, https://openreview.net/pdf?id=XUK8q1ISCv
• OTD Nguyen, I Fotopoulos, I Tsamardinos, V Lagani, OD Røe (2026) Ever-smokers in Norway and lung cancer: median time from self-reported smoking debut to lung cancer diagnosis in eleven prospective Norwegian population studies (CONOR), ERJ Open Research, https://doi.org/10.1183/23120541.00351-2026
• M Ollu, N Komodakis (2026) Denoising Hierarchical Representations: Joint Continuous Diffusion for Language Modeling, arXiv preprint arXiv:2610.08738
• M Panagopoulou, MA Papadaki, M Karaglani, T Theodosiou, K Michaelidou, S, I Tsamardinos, S Kakolyris, S, E Chatzaki (2026) Νovel methylation biomarkers in liquid biopsy and classifying biosignatures for the clinical management of breast cancer, Breast Cancer Research 28 (1), 1, https://doi.org/10.1186/s13058-025-02170-y
• B Psomas, D Christopoulos, E Baltzi, I Kakogeorgiou, T Aravanis, N Komodakis, K Karantzalos, Y Avrithis, G Tolias (2026) Attention, Please! Revisiting Attentive Probing for Masked Image Modeling, ICLR 2026, (pdf)
• C Sarafoglou, A Kofidis, M de Boer, M Mylonakis, K Mavrakis, G Zacharakis, Y Pantazis, G Gouridis (2026) NEXT-FRET maps nonequilibrium rerouting of Escherichia coli maltose-binding protein folding by its signal peptide and chaperones, Proceedings of the National Academy of Sciences 123 (20), e2529979123, https://doi.org/10.1073/pnas.2529979123
• E Sisamaki, Y Pantazis, V Tsiaras, Y Stylianou (2026) Group Delay Product Spectrograms employed as conditioning in Speech Synthesis, EUSIPCO 2026, https://www.eurasip.org/Proceedings/Eusipco/Eusipco2026/pdfs/0000481.pdf
• M Tsagris, N Alharbi, A Alenazi, Y Pantazis (2026) The α–regression for compositional data: a unified framework for standard, temporal and spatial regression models including compositional predictors, https://doi.org/10.21203/rs.3.rs-9930102/v1

• G Aletras, M Bachlitzanaki, M Stratinaki, E Foukarakis, I Petrakis, Y Pantazis, M Hamilos, K Stylianou (2025) Diuretic Resistance in Cardiorenal Syndrome: Mechanisms, Monitoring and Phenotype-Tailored Management, Frontiers in Cardiovascular Medicine, (html file)
• G Aletras, M Bachlitzanaki, M Stratinaki, E Lamprogiannakis, S Panagoutsos, K Kantartzi, T Georgopoulou, I Petrakis, E Foukarakis, Y Pantazis, M Hamilos, K Stylianou (2025) Unraveling Acute Cardiorenal Syndrome: Predictors and Consequences in Acute Heart Failure, Journal of Clinical Medicine 14 (7), 2270,  doi: 10.3390/jcm14072270.
• G Aletras, M Bachlitzanaki, M Stratinaki, E Lamprogiannakis, I Petrakis, E Foukarakis, Y Pantazis, M Hamilos, K Stylianou (2025) Integrating Novel Biomarkers into Clinical Practice: A Practical Framework for Diagnosis and Management of Cardiorenal Syndrome, Life 15 (10), 1540, https://doi.org/10.3390/life15101540
• G Aletras, M Bachlitzanaki, M Stratinaki, A Nerantzoulis, T Georgopoulou, E Lamprogiannakis, E Foukarakis, Y Pantazis, M Hamilos, K Stylianou (2025) Beyond a passing decline: acute cardiorenal syndrome as a marker of true renal dysfunction, European Heart Journal, 46 (Supplement_1), ehaf784.1423, https://doi.org/10.1093/eurheartj/ehaf784.1423
• G Aletras, M Bachlitzanaki, M Stratinaki, I Petrakis, T Georgopoulou, Y Pantazis, E Foukarakis, M Hamilos, K Stylianou (2025) The Role of Chloride in Cardiorenal Syndrome: A Practical Review, Journal of Clinical Medicine 14 (15), 5230, https://doi.org/10.3390/jcm14155230
• G Arampatzis, S Katsarakis, C Makridakis (2025) A generative modeling/Physics-Informed Neural Network approach to random differential equations, arXiv preprint arXiv:2507.01687
• A Castellani, Z Papadovasilakis, G Papoutsoglou, M Cole, B Bautsch, T Rodemann, I Tsamardinos, A Harden (2025) Predicting and Explaining Traffic Crash Severity Through Crash Feature Selection, arXiv preprint arXiv:2508.11504
• YC Cheng, H Gu, TO McDonald, W Wu, S Tripathi, C Guarducci, D Russo, DL Abravanel, M Bailey, Y Wang, Y Zhang, Y Pantazis, H Levine, R Jeselsohn, MA Katsoulakis, F Michor (2025) PROFET Predicts Continuous Gene Expression Dynamics from scRNA-seq Data to Elucidate Heterogeneity of Cancer Treatment Responses, bioRxiv, 2025.06. 27.662030, (pdf).
• A Doxa, C Adam, N Nagkoulis, AD Mazaris, S Katsanevakis (2025) prior3D: An R package for three-dimensional conservation prioritization, Ecological Modelling 499, 110919.
• K Ellrott, CK Wong, C Yau, MAA Castro, JA Lee, BJ Karlberg, JK Grewal, V Lagani, B Tercan, V Friedl, T Hinoue, V Uzunangelov, L Westlake, X Loinaz, I Felau, PI Wang, A Kemal, SJ Caesar-Johnson, I Shmulevich, AJ Lazar, I Tsamardinos,… (2025) Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets, Cancer Cell 43 (2), 195-212. e11 (pdf file).
• P Evangelidakis, Y Kamarianakis (2025) A Comparative Analysis of Robust Penalized Estimators for Periodic Time Series, Greeks in AI Symposium 2025 , https://openreview.net/forum?id=pAfs4ztGG7
• E Georgoulis, MA Zervou, Y Pantazis (2025) Transfer Learning on Protein Language Models Improves Antimicrobial Peptide Classification, Scientific Reports, https://doi.org/10.21203/rs.3.rs-5768912/v1
• A Gerontopoulos, S Gidaris, N Komodakis (2025) Multi-Token Prediction Needs Registers, arXiv preprint arXiv:2505.10518
• S Giakoumi, AJ Richardson, A Doxa, S Moro, M Andrello, JO Hanson, V Hermoso, T Mazor, J McGowan, H Kujala, E Law, JG Álvarez-Romero, RA Magris, E Gissi, N Arafeh-Dalmau, A Metaxas, EA Virtanen, NC Ban, RM Runya, DC Dunn, S Fraschetti, I Galparsoro, RJ Smith, F Bastardie, V Stelzenmüller, HP Possingham, S Katsanevakis (2025) Advances in systematic conservation planning to meet global biodiversity goals, Trends in Ecology & Evolution 40 (4), 395-410.
• N Gkorgkolis, N Kougioulis, MX Wang, B Caglayan, A Tonon, D Simionato, I Tsamardinos (2025) Temporal Causal-based Simulation for Realistic Time-series Generation, arXiv preprint arXiv:2506.02084
• G Grekas, CG Makridakis, T Pryer (2025) PINN-DG: Residual neural network methods trained with Finite Elements, arXiv preprint arXiv:2507.03521
• G Grekas, CG Makridakis (2025) Deep Ritz – Finite element methods: Neural network methods trained with finite elements, Computer Methods in Applied Mechanics and Engineering, Vol. 437, 117798, https://doi.org/10.1016/j.cma.2025.117798
• J Grewal, A Robertson, K Ellrott, C Wong, J Lee, C Yau, B Tercan, M Castro, C Benz, T Knijnenburg, V Chagas, V Apolonio, V Friedl, J Stuart, V Uzunangelov, J Andersen, A Cherniack, G Gao, G Getz, S Hoyt, W Roh, L Westlake, S Jones, S Caesar-Johnson, JDemchok, I Felau, A Kemal, R Tarnuzzer, Z Wang, L Yang, J Zenklusen, R Akbani, B M Broom, Z Ju, A Schultz, A Ojesina, K Hoadley, A Lal, D Ramazzotti, C Wang, A Lazar, L Roberts, TK Kim, I Shmulevich, P Charonyktakis, V Lagani, I Tsamardinos, … (2025) Protocol for obtaining cancer type and subtype predictions using subSCOPE, STAR protocols 6 (2), 103705, https://doi.org/10.1016/j.xpro.2025.103705
• E Karypidis, I Kakogeorgiou, S Gidaris, N Komodakis (2025) Advancing Semantic Future Prediction through Multimodal Visual Sequence Transformers, Proceedings of the Computer Vision and Pattern Recognition Conference, 3793-3803.
• T. Kassiotis and Y. Pantazis (2025) Disentangling Speech Representations with Mutual Information Estimators for Expressive Synthesis, 33rd European Signal Processing Conference (EUSIPCO 2025), Palermo, Italy, September 8-12, 2025, https://eusipco2025.org/wp-content/uploads/pdfs/0000451.pdf
• K Konsta, A Doxa, S Katsanevakis, AD Mazaris (2025) Projected marine heatwaves over the Mediterranean Sea and the network of marine protected areas: a three-dimensional assessment, Climatic Change 178 (2), 1-20.
• K Kostas, S Kar, K Mavridis, E Deligianni, E Roditakis, E Gizeli, J Vontas, Y. Kamarianakis, P. Karanis, M. Kotsyfakis (2025) Tick-borne challenges in a changing climate: risks and mitigation strategies for Mediterranean livestock systems, Entomologia Generalis, DOI:10.1127/entomologia/3648
• T Kouzelis, I Kakogeorgiou, S Gidaris, N Komodakis (2025) EQ-VAE: Equivariance Regularized Latent Space for Improved Generative Image Modeling, arXiv preprint arXiv:2502.09509
• T Kouzelis, E Karypidis, I Kakogeorgiou, S Gidaris, N Komodakis (2025) Boosting Generative Image Modeling via Joint Image-Feature Synthesis, arXiv preprint arXiv:2504.16064
• S LaPlante, E Perković, S Triantafillou (2025) Data-Driven Adjustment for Multiple Treatments, arXiv preprint arXiv:2503.08971
• OP Leary, H Hwang, MD Pizzagalli, V Voong, L Tran, M Duffy, J Arditi, A Choi, J Zepecki, G Papoutsoglou, I Tsamardinos, PL Zadnik Sullivan, PM Klinge, N Tapinos (2025) BIOM-67. A MIRNA-BASED LIQUID BIOPSY FOR BRAIN TUMOR DIAGNOSIS AND IN VITRO EFFECTS OF MIRNA INHIBITION ON GLIOBLASTOMA STEM CELL GROWTH, VIABILITY, AND SELF-RENEWAL, Neuro-Oncology 27 (Supplement_5), v39-v39.
• K Lelova, GF Cooper, S Triantafillou (2025) Transportability without Graphs: A Bayesian Approach to Identifying s-Admissible Backdoor Sets, arXiv preprint arXiv:2505.12801
• C Liu, A Papapantoleon, J Rou (2025) Convergence of the generalization error for deep gradient flow methods for PDEs, arXiv preprint arXiv:2512.25017
• C.G. Makridakis, A. Pim, T. Pryer (2025) A Deep Uzawa-Lagrange Multiplier Approach for Boundary Conditions in PINNs and Deep Ritz Methods, Journal of Machine Learning, Vol. 4 (3), 166–191, (html file)
• C. Makridakis, A. Pim, T. Pryer, N. Rekatsinas (2025) Deep Uzawa for Kinetic Transport with Lagrange-Enforced Boundaries, arXiv preprint arXiv:2507.19907
• N Myrtakis, I Tsamardinos, V Christophides (2025) A Comparative Analysis of Influence Signals for Data Debugging, arXiv preprint arXiv:2506.11584
• N Myrtakis, I Tsamardinos, V Christophides (2025) Data Glitches Discovery using Influence-based Model Explanations, Proceedings of the 31st ACM SIGKDD Conference on Knowledge Discovery and and Data Mining V.1, pp. 1068-1079. https://doi.org/10.1145/3690624.3709285
• N Myrtakis, I Tsamardinos, V Christophides (2025) Data Glitches Discovery using Influence-based Model Explanations, Greeks in AI Symposium 2025 (pdf).
• M Panagopoulou, M Papadaki, M Karaglani, T Theodosiou, K Michaelidou, S Baritaki, I Tsamardinos, S Kakolyris, S Agelaki, E Chatzaki (2025), Νovel methylation biomarkers in liquid biopsy and classifying biosignatures for the clinical management of Breast Cancer, https://doi.org/10.21203/rs.3.rs-6697291/v1
• C Papadaki, M Mortoglou, AE Boukouris, K Gourlia, M Markaki, E Lagoudaki, A Koutsopoulos, I Tsamardinos, D Mavroudis, S Agelaki (2025) MicroRNA Expression Analysis and Biological Pathways in Chemoresistant Non-Small Cell Lung Cancer, Cancers 17 (15), 2504.
• A Papapantoleon, A Saplaouras, S Theodorakopoulos (2025) Stability of backward propagation of chaos, arXiv preprint arXiv:2506.03562
• G Paterakis, A Castellani, G Papoutsoglou, T Rodemann, I Tsamardinos (2025) A Comprehensive Perspective on Explainable AI across the Machine Learning Workflow, arXiv preprint arXiv:2508.11529
• B Psomas, D Christopoulos, E Baltzi, I Kakogeorgiou, T Aravanis, N Komodakis, K Karantzalos, Y Avrithis, G Tolias (2025) Attention, Please! Revisiting Attentive Probing for Masked Image Modeling, arXiv preprint arXiv:2506.10178
• C Sarafoglou, A Kofidis, M de Boer, M Mylonakis, K Mavrakis, G Zacharakis, Y Pantazis, G Gouridis (2025) NEXT-FRET: A solution-based smFRET platform to resolve folding intermediates under native conditions, bioRxiv, 2025.07. 30.666321, (pdf).
• FA Shah, VB Talisa, CCH Chang, S Triantafyllou, L Tang, FB Mayr, … (2025) Heterogeneity in the effect of early goal-directed therapy for septic shock: A secondary analysis of two multicenter international trials, Critical Care Medicine 53 (1), e4-e14.
• D Shopkhoev, A Ali, M Zhussip, V Malykh, S Lefkimmiatis, N Komodakis, S Zagoruyko (2025) ReplaceMe: Network Simplification via Layer Pruning and Linear Transformations, arXiv preprint arXiv:2505.02819
• O Simantiraki, M Markaki,Y Pantazis (2025) Dynamic Speech Generation to Enhance Intelligibility in Noisy Environments, ICASSP 2025-2025 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), Hyderabad, India, 2025, pp. 1-5, doi: 10.1109/ICASSP49660.2025.10887886
• E. Sisamaki, Y. Pantazis, V. Tsiaras, Y. Stylianou (2025) Distillation-free, stable Training of ClariNet Vocoder with Spectral Energy Distance. 33rd European Signal Processing Conference (EUSIPCO 2025), Palermo, Italy, September 8-12, 2025, https://eusipco2025.org/wp-content/uploads/pdfs/0000541.pdf
• Q Spinat, B Audelan, X Jiang, B Caba, A Benichoux, D Ioannidou, O Teboul, N Komodakis, W Huijbers, R Gabr, A Gafson, C Eliott, D Arnold, N Paragios, S Belachew (2025) Deep learning detection of acute and sub-acute lesion activity from single-timepoint conventional brain MRI in multiple sclerosis, Medical Image Analysis 105, 103619, https://doi.org/10.1016/j.media.2025.103619
• Spinat, Q., Duran, A., Teboul, O., Paragios, N., Komodakis, N. (2026). Diffusing Boundaries: CBCT-to-CT Translation with Extended Field of View. In: Gee, J.C., et al. Medical Image Computing and Computer Assisted Intervention – MICCAI 2025.  Lecture Notes in Computer Science, vol 15972. Springer, Cham. https://doi.org/10.1007/978-3-032-05169-1_15
• B Tercan, V Apolonio, V Chagas, C Wong, J Lee, C Yau, C Benz, J Stuart, B Karlberg, K Ellrott, J Grewal, S Jones, T Knijnenberg, M Castro, V Friedl, V Uzunangelov, R Beroukhim, A Cherniack, G Gao, G Getz, S Hoyt, X Loinaz, W Roh, C Stewart, L Westlake, AG Robertson, S Caesar-Johnson, J Demchok, I Felau, A Kemal, R Tarnuzzer, P Wang, Z Wang, L Yang, J Zenklusen, R Akbani, B Broom, Z Ju, A Schultz, A Ojesina, K Hoadley, A Lal, D Ramazzotti, C Wang, A Lazar, L Roberts, TK Kim, I Shmulevich, P Charonyktakis, V Lagani, I Tsamardinos, … (2025) Protocol for assessing distances in pathway space for classifier feature sets from machine learning methods, STAR protocols 6 (2), 103681.
• G Tsaknakis, AM Perantonaki, S Papadakis, A Komodromou, I Mavroudi, C Pontikoglou, Z Papadovasilakis, G Papoutsoglou, I Tsamardinos, H Papadaki (2025) Novel diagnostic and prognostic tools for patients with chronic idiopathic neutropenia: Data on a cohort of 266 patients, Blood 146, 623, https://doi.org/10.1182/blood-2025-623
• MA Zervou, E Doutsi, Y Pantazis, P Tsakalides (2025) Classifier-driven generative adversarial networks for enhanced antimicrobial peptide design, Briefings in Bioinformatics 26 (5), bbaf500, https://doi.org/10.1093/bib/bbaf500
• M. A. Zervou, E. Doutsi, Y. Pantazis, P. Tsakalides (2025) De Novo Antimicrobial Peptide Design with Feedback Generative Adversarial Networks, Int. J. Mol. Sci. 2024, 25, 5506. https://doi.org/10.3390/ijms25105506
• MA Zervou, F Teufel, Y Pantazis, P Tsakalides, O Winther (2025) Multi-Objective Peptide Design via Token-Aligned Preference Optimization, NeurIPS 2025 (AI for Science Workshop) (pdf file)

• C Adam, A Doxa (2024) Package ‘priorCON’, https://ftp.gwdg.de/pub/misc/cran/web/packages/priorCON/priorCON.pdf
• C Bayer, CB Hammouda, A Papapantoleon, M Samet, R Tempone (2024) Quasi-Monte Carlo for Efficient Fourier Pricing of Multi-Asset Options, arXiv preprint arXiv:2403.02832
• K Biza, A Ntroumpogiannis, S Triantafillou, I Tsamardinos (2024), ETIA: Towards an Automated Causal Discovery Pipeline, International Conference on Discovery Science, 65-80.
• K Biza, A Ntroumpogiannis, S Triantafillou, I Tsamardinos (2024) Towards Automated Causal Discovery: a case study on 5G telecommunication data, arXiv preprint arXiv:2402.14481
• IK Buhl, J Nart, Z Papadovasilakis, S Sørensen, PB Jensen, B Ejlertsen, UH Buhl, I Tsamardinos (2024) Predicting epirubicin response in Danish patients with breast cancer, Journal of Clinical Oncology 42 (16_suppl), 539-539.
• A Chatzimentor, A Doxa, M Butenschön, T Kristiansen, MA Peck, S Katsanevakis, AD Mazaris (2024) Diving into warming oceans: Assessing 3D climatically suitable foraging areas of loggerhead sea turtles under climate change, Journal for Nature Conservation, 126620, https://doi.org/10.1016/j.jnc.2024.126620
• P Charonyktakis, G Antoniou, M Adamou, M Doyle, S Batsakis, I Tsamardinos (2024) AI-Based Suicide Risk Assessment, 15th International Conference on Information, Intelligence, Systems & Applications (IISA), 1-4.
• E Delasalles, R Vauclin, E Mengin, B Ungun, ML Costea, N Bus, N Komodakis, P Fenoglietto, G Gungor, N Paragios (2024) 1377: Dose Prediction for Prostate Radiotherapy Planning, Radiotherapy and Oncology 194, S3560-S3562.
• E Dragazi, S Liu, A Papapantoleon (2024) Improved model-free bounds for multi-asset options using option-implied information and deep learning, arXiv preprint arXiv:2404.02343
• K Ellrott, CK Wong, C Yau, MA Castro, J Lee, B Karlberg, JK Grewal, V Lagani, B Tercan, V Friedl, T Hinoue, V Uzunangelov, L Westlake, X Loinaz, I Felau, P Wang, A Kemal, SJ Caesar-Johnson, I Shmulevich, AJ Lazar, I Tsamardinos, KA Hoadley, Cancer Genome Atlas Analysis Network, GA Robertson, TA Knijnenburg, CC Benz, JM Stuart, JC Zenklusen, AD Cherniack, PW Laird (2024) Leveraging compact feature sets for TCGA-based molecular subtype classification on new samples, Cancer Research 84 (6_Supplement), 6548-6548.
• J Fagin, G Vernardos, G Tsagkatakis, Y Pantazis, AJ Shajib, M O’Dowd (2024) Measuring the Substructure Mass Power Spectrum of 23 SLACS Strong Galaxy-Galaxy Lenses with Convolutional Neural Networks, Monthly Notices of the Royal Astronomical Society 532 (2), 2248-2269, https://doi.org/10.1093/mnras/stae1593
• A Fayomi, Y Pantazis, M Tsagris, ATA Wood (2024) Cauchy robust principal component analysis with applications to high-dimensional data sets, Statistics and Computing 34 (1), 1-14.
• I Fotopoulos, OTD Nguyen, TH Nøst, M Markaki, V Lagani, R Mjelle, TM Sandanger, P Sætrom, I Tsamardinos, OD Røe (2024) Promising microRNAs in pre-diagnostic serum associated with lung cancer up to eight years before diagnosis: a HUNT study, Journal of Cancer Research and Clinical Oncology 150 (7), 355.
• EH Georgoulis, A Papapantoleon, C Smaragdakis (2024) A deep implicit-explicit minimizing movement method for option pricing in jump-diffusion models, arXiv preprint arXiv:2401.06740
• F Goudarzi, A Doxa, MR Hemami, AD Mazaris (2024) Thermal vulnerability of sea turtle foraging grounds around the globe, Communications Biology 7 (1), 347.
• H Gu, P Birmpa, Y Pantazis, L Rey-Bellet, MA Katsoulakis (2024) Lipschitz-regularized gradient flows and generative particle algorithms for high-dimensional scarce data, SIAM Journal on Mathematics of Data Science 6 (4), 1205-1235. (pdf)
• I Kakogeorgiou, S Gidaris, K Karantzalos, N Komodakis (2024) SPOT: Self-Training with Patch-Order Permutation for Object-Centric Learning with Autoregressive Transformers, Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 22776-22786. (pdf)
• Y Kamarianakis, Y Pantazis, E Kalligiannaki, TD Katsaounis, K Kotsovos, I Gereige, M Abdullah, A Jamal, A Tzavaras (2024) Robust day-ahead solar forecasting with endogenous data and sliding windows, J. Renewable Sustainable Energy 16 (026103), 1-13.
• E Karypidis, I Kakogeorgiou, S Gidaris, N Komodakis (2024) DINO-Foresight: Looking into the Future with DINO, arXiv preprint arXiv:2412.11673
• A Koutsimpela, M Loulakis (2024) On the optimally controlled stochastic shallow lake, International Journal of Control 97 (11), 2539-2551.
• A Koutsimpela, M Loulakis (2024) Optimal control, viscosity approximation and Arrhenius Law for the shallow lake problem, arXiv preprint arXiv:2401.07642
• C Liu, A Papapantoleon, A Saplaouras (2024) Convergence rates for Backward SDEs driven by Levy processes arXiv preprint arXiv:2402.01337
• N Myrtakis, I Tsamardinos, V Christophides (2024) AutoML for Explainable Anomaly Detection (XAD), The Provenance of Elegance in Computation-Essays Dedicated to Val Tannen (pdf)
• OTD Nguyen, I Fotopoulos, M Markaki, I Tsamardinos, V Lagani, OD Røe (2024) Improving Lung Cancer Screening Selection: The HUNT Lung Cancer Risk Model for Ever-Smokers Versus the NELSON and 2021 United States Preventive Services Task Force Criteria in the Cohort of Norway: A Population-Based Prospective Study, JTO Clinical and Research Reports 5 (4), 100660.
• OTD Nguyen, I Fotopoulos, TH Nøst, M Markaki, V Lagani, I Tsamardinos, OD Røe (2024) The HUNT lung-SNP model: genetic variants plus clinical variables improve lung cancer risk assessment over clinical models, Journal of Cancer Research and Clinical Oncology 150 (8), 389.
• OTD Nguyen, Y Fotopoulos, TH Nøst, M Markaki, V Lagani, P Sætrom, I Tsamardinos, OD Røe (2024) Differentially expressed microRNAs in prediagnostic serum linked to lung cancer up to eight years before diagnosis in prospective, population-based cohorts: A HUNT study, Journal of Clinical Oncology 42 (16_suppl), 8041-8041.
• OTD Nguyen, Y Fotopoulos, TH Nøst, M Markaki, V Lagani, I Tsamardinos, OD Røe (2024) Effect of novel polygenetic variant of HUNT lung cancer model on lung cancer risk assessment over clinical model among light smokers (average< 9 pack-years), Journal of Clinical Oncology 42 (16_suppl), e20066-e20066.
• M Panagopoulou, T Panou, A Gkountakos, G Tarapatzi, M Karaglani, I Tsamardinos, E Chatzaki (2024) BRCA1 & BRCA2 methylation as a prognostic and predictive biomarker in cancer: Implementation in liquid biopsy in the era of precision medicine, Clinical Epigenetics 16(1), 1-16.
• A Papapantoleon, J Rou (2024) A time-stepping deep gradient flow method for option pricing in (rough) diffusion models, arXiv preprint arXiv:2403.00746
• A Papapantoleon, A Saplaouras, S Theodorakopoulos (2024) Existence, uniqueness and propagation of chaos for general McKean-Vlasov and mean-field BSDEs, arXiv preprint arXiv:2408.13758
• K Paraschakis, A Castellani, G Borboudakis, I Tsamardinos (2024) Confidence Interval Estimation of Predictive Performance in the Context of AutoML, arXiv preprint arXiv:2406.08099
• G Paterakis, G Borboudakis, K Paraschakis, P Charonyktakis, I Tsamardinos (2024) CLBO: Conditional Local Bayesian Optimization for Automated Machine Learning, Proceedings of the 13th Hellenic Conference on Artificial Intelligence, 1-5.
• G Paterakis, S Fafalios, P Charonyktakis, V Christophides, I Tsamardinos (2024) Do we really need imputation in AutoML predictive modeling? ACM Transactions on Knowledge Discovery from Data, 18 (6), 1-64.
• V Perifanis, E Karypidis, N Komodakis, P Efraimidis (2024) SFTC: Machine Unlearning via Selective Fine-tuning and Targeted Confusion, European Interdisciplinary Cybersecurity Conference, 29-36. (pdf)
• M Raptakis, Y Pantazis (2024) Fourier Attention: The Attention Mechanism as a Frequency Analyzer, Proc. IberSPEECH 2024, 116-120. (pdf)
• OD Roe, I Fotopoulos, OTD Nguyen, I Tsamardinos, V Lagani, TE Strand, H Ashraf (2024) 1565P Improving lung cancer screening selection: Hunt Lung Cancer Model (HUNT LCM) versus PLCOm2012, early results after two rounds of screening in a prospective screening pilot study in Norway (TIDL), Annals of Oncology 35, S949 (pdf)
• OD Roe, OTD Nguyen, I Fotopoulos, I Tsamardinos, V Lagani (2024) 1193P Ethical lung cancer screening selection? Comparison of the European 4-In The Long Run (4ITLR) criteria with the 2021 USPSTF (US), and HUNT lung cancer risk model in a large Norwegian prospective population-based study, Annals of Oncology 35, S769-S770.
• OD Roe, OTD Nguyen, I Fotopoulos, I Tsamardinos, V Lagani (2024) 1193P Ethical lung cancer screening selection? Comparison of the European 4-In The Long Run (4ITLR) criteria with the 2021 USPSTF (US), and HUNT lung cancer risk model in a large Norwegian prospective population-based study, Annals of Oncology 35, S769-S770. (pdf)
• M Schmidt-Mengin, A Benichoux, S Belachew, N Komodakis, N Paragios (2024) ToNNO: Tomographic Reconstruction of a Neural Network’s Output for Weakly Supervised Segmentation of 3D Medical Images, Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 11428-11438. (pdf)
• O Simantiraki, M Cooke (2024) Listeners’ F0 preferences in quiet and stationary noise, Proc. Interspeech 2024, 4224-4228 (pdf)
• MA Zervou, E Doutsi, Y Pantazis, P Tsakalides (2024) Multitask Classification of Antimicrobial Peptides for Simultaneous Assessment of Antimicrobial Property and Structural Fold, ICASSP 2024-2024 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), 1836-1840.
• MA Zervou, E Doutsi, Y Pantazis, P Tsakalides (2024) De Novo Antimicrobial Peptide Design with Feedback Generative Adversarial Networks, International Journal of Molecular Sciences 25 (10), 5506 (pdf)

• G Baxevani, V Harmandaris, E Kalligiannaki, I Tsantili (2023) Bottom-up transient time models in coarse-graining molecular systems, arXiv preprint arXiv:2302.05159.
• J Birrell, Y Pantazis, P Dupuis, MA Katsoulakis, L Rey-Bellet, Function-space regularized Rényi divergences, The Eleventh International Conference on Learning Representations 2023.
• A Chatzimentor, A Doxa, S Katsanevakis, AD Mazaris (2023) Are Mediterranean marine threatened species at high risk by climate change? Global Change Biology 29 (7), 1809-1821
• G Chatzinikolaou, K Stratigi, A Siametis, E Goulielmaki, A Akalestou-Clocher, I Tsamardinos, P Topalis, C Austin, B Bouwman, N Crosetto, J Altmüller, G Garinis (2023) XPF interacts with TOP2B for R-loop processing and DNA looping on actively transcribed genes, Science Advances 9 (45), eadi2095
• Georgoulis, E.H., Loulakis, M., Tsiourvas, A. (2023) Discrete gradient flow approximations of high dimensional evolution partial differential equations via deep neural networks, Communications in Nonlinear Science and Numerical Simulation, 117, art. no. 106893.
• S Gidaris, A Bursuc, O Simeoni, A Vobecky, N Komodakis, M Cord, P Pérez, MOCA: Self-supervised Representation Learning by Predicting Masked Online Codebook Assignment, arXiv preprint arXiv:2307.09361, 2023.
• I Karagiannaki, K Gourlia, V Lagani, Y Pantazis, I Tsamardinos (2023) Learning biologically-interpretable latent representations for gene expression data: pathway activity score learning algorithm, Machine Learning 112 (11), 4257-4287
• K Konsta, A Doxa, S Katsanevakis, AD Mazaris (2023) Projected intensification of subsurface marine heatwaves under climate change (pdf file)
• A Koutsimpela, M Loulakis, (2023) On the optimally controlled stochastic shallow lake, International Journal of Control, 1-13.
• K Lakiotaki, Z Papadovasilakis, V Lagani, S Fafalios, P Charonyktakis, M Tsagris, I Tsamardinos (2023) Automated machine learning for Genome Wide Association Studies, Bioinformatics 39 (9), btad545
• T Le, J Li, R Ness, S Triantafillou, S Shimizu, P Cui, K Kuang, J Pei,F. Wang, M. Prosperi, Preface: The 2023 ACM SIGKDD Workshop on Causal Discovery, Prediction and Decision, The KDD’23 Workshop on Causal Discovery, Prediction and Decision, 2023 (html file)
• A Litsas, F Fraggelakis, GD Tsibidis, E Stratakis, Y Pantazis (2023) Inferring the Parameters of Ultrafast Lasers from Images with Surface Patterns, 2023 International Symposium on Image and Signal Processing and Analysis (ISPA)
• M Loulakis (2023) Correction: On the Symmetry of the Diffusion Coefficient in Asymmetric Simple Exclusion, Journal of Statistical Physics 190 (11), 177
• M Loulakis, CG Makridakis, A new approach to generalisation error of machine learning algorithms: Estimates and convergence, arXiv preprint arXiv:2306.13784, 2023
• S Martinot, N Komodakis, M Vakalopoulou, N Bus, C Robert, E Deutsch, N Paragios, Differentiable Gamma Index-Based Loss Functions: Accelerating Monte-Carlo Radiotherapy Dose Simulation, International Conference on Information Processing in Medical Imaging, 485-496, 2023 (html file)
• S Martinot, N Komodakis, M Vakalopoulou, N Bus, C Robert, E Deutsch, N Paragios, PO-1802 Deep Particles Embedding: accelerating Monte-Carlo dose simulations, Radiotherapy and Oncology 182, S1526-S1527, 2023
• Mazaris,AD, Dimitriadis, C, Papazekou, M, Schofield, G, Doxa, A, Chatzimentor, A, Turkozan, O, Katsanevakis S, Lioliou A, Abalo-Morla S, Aksissou M, Arcangeli A, Attard V, Atttiri H, Hili EI,Atzori F, Belda EJ, Nakhla LB, Berbash AA, Bjorndal KA, Broderick AC, Camiñas JA, Candan O, Cardona I, Cetkovic I, Dakik N, Andrea de Lucia G, Dimitrakopoulos PS,  Diryaq S, Favilli C,  Fortuna, CM, Fuller WJ,  Gallon S, Hamza A, Jribi I,  Ben Ismail M, Kamarianakis, Y, Kaska Y Korro K, Koutsoubas D, Lauriano G, Lazar B, March D, Marco A, Minotou C, Monsinjon JR, Naguib NM, Palialexis A, Piroli V, Karaa Sami K, Sönmez B, Sourbès L, Sözbilen, D, Vandeperre, F, Vignes, P, Xanthakis, M, Köpsel, V, Peck, MA, Priorities for Mediterranean marine turtle conservation and management in the face of climate change, Journal of Environmental Management, Volume 339, 2023, 117805
• K Mouloudakis, F Vouzinas, A Margaritakis, A Koutsimpela, G Mouloudakis, V Koutrouli, M Skotiniotis, GP Tsironis, M Loulakis, MW Mitchell, G Vasilakis, IK Kominis (2023), Inter-species spin-noise correlations in hot atomic vapors, Physical Review A 108 (5), 052822.
• A Neufeld, A Papapantoleon, Q Xiang (2023) Model-free bounds for multi-asset options using option-implied information and their exact computation, Management Science 69 (4), 2051-2068.
• Ntroumpogiannis, A., Giannoulis, M., Myrtakis, N., Christophides, V., Simon, E., Tsamardinos, I. (2023) A meta-level analysis of online anomaly detectors, The VLDB Journal, 1-42.
• A Papapantoleon, D Possamaï, A Saplaouras (2023) Stability of backward stochastic differential equations: the general Lipschitz case, Electronic Journal of Probability 28, 1-56.
• P Petsas, M Tzivanopoulou, A Doxa, SF Sailley, AD Mazaris (2023) Climate change on sea currents is not expected to alter contemporary migration routes of loggerhead sea turtles, Ecological Modelling 475, 110220
• OD Røe, OTD Nguyen, Y Fotopoulos, V Lagani, I Tsamardinos, Prediction of 6-year risk of bladder cancer using the HUNT Lung Cancer Risk Model in ever-smokers: A HUNT study, Journal of Clinical Oncology 41 (16_suppl), e16581-e16581, 2023.
• K Rounis, D Makrakis, C Papadaki, A Monastirioti, L Vamvakas, K Kalbakis, K Gourlia, I Xanthopoulos, I Tsamardinos, D Mavroudis, S Agelaki (2023) Correction: Prediction of outcome in patients with non-small cell lung cancer treated with second line PD-1/PDL-1 inhibitors based on clinical parameters: Results from a prospective, single institution study, Plos one 18 (11), e0294382
• Simantiraki, O., Pantazis, Y., Cooke (2023) The effect of masking noise on listeners’ spectral tilt preferences, Proc. INTERSPEECH 2023, 3058-3062. (pdf)
• O Simantiraki, AE Wagner, M Cooke (2023) The impact of speech type on listening effort and intelligibility for native and non-native listeners, Frontiers in Neuroscience 17, 1235911 (html)
• S Singla, N Murali, F Arabshahi, S Triantafyllou, K Batmanghelich (2023) Augmentation by Counterfactual Explanation-Fixing an Overconfident Classifier, Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, pp. 4720-4730.
• GV Thomaidis, K Papadimitriou, S Michos, E Chartampilas, I Tsamardinos, A characteristic cerebellar biosignature for bipolar disorder, identified with fully automatic machine learning, IBRO Neuroscience Reports 15, 77-89 2023.
• GV Thomaidis, K Papadimitriou, S Michos, E Chartampilas, I Tsamardinos, Corrigendum to “A characteristic cerebellar biosignature for bipolar disorder, identified with fully automatic machine learning”, IBRO Neuroscience Reports 15, 178, 2023.
• S Triantafillou, F Jabbari, GF Cooper, Learning Treatment Effects from Observational and Experimental Data, International Conference on Artificial Intelligence and Statistics, 7126-7146, 2023
• A Tsavdaridou, A Doxa, AD Mazaris (2023) Towards achieving a twenty-fold increase in the coverage of freshwater species distributions within protected areas in Europe, Biological Conservation 285, 110233
• K Tzirakis, Y Kamarianakis, N Kontopodis, CV Ioannou, Selection of Bifurcated Grafts’ Dimensions during Aorto-Iliac Vascular Reconstruction Based on Their Hemodynamic Performance, Bioengineering 10 (7), 776, 2023
• Tzirakis K, Kamarianakis Y, Kontopodis N, Ioannou CV. Classification of Blood Rheological Models through an Idealized Symmetrical Bifurcation. Symmetry. 2023; 15(3):630
• K Tzirakis, Y Kamarianakis, N Kontopodis, CV Ioannou, The Effect of Blood Rheology and Inlet Boundary Conditions on Realistic Abdominal Aortic Aneurysms under Pulsatile Flow Conditions, Bioengineering 10 (2), 272, 2023.
• L Van Mieghem, A Papapantoleon, J Papazoglou-Hennig (2023) Machine learning for option pricing: an empirical investigation of network architectures, arXiv preprint arXiv:2307.07657

• D Bartl, M Kupper, T Lux, A Papapantoleon, S Eckstein (2020) (appendix) Marginal and dependence uncertainty: bounds, optimal transport, and sharpness, SIAM Journal on Control and Optimization 60, 410–434.
• C Bayer, CB Hammouda, A Papapantoleon, M Samet, R Tempone (2022) Optimal damping with hierarchical adaptive quadrature for efficient Fourier pricing of multi-asset options in Lévy models, arXiv preprint arXiv:2203.08196
• Birrell, J., Dupuis, P., Katsoulakis, M.A., Pantazis, Y., Rey-Bellet, L. (f,Γ)-Divergences: Interpolating between f-Divergences and Integral Probability Metrics (2022) Journal of Machine Learning Research, 23, .
• Birrell, J., Katsoulakis, M.A., Pantazis, Y. Optimizing Variational Representations of Divergences and Accelerating Their Statistical Estimation (2022) IEEE Transactions on Information Theory, 68 (7), pp. 4553-4572.
• Biza, K., Tsamardinos, I., Triantafillou, S. Out-of-Sample Tuning for Causal Discovery (2022) IEEE Transactions on Neural Networks and Learning Systems, pp. 1-11.
• Bowler, S., Papoutsoglou, G., Karanikas, A., Tsamardinos, I., Corley, M.J., Ndhlovu, L.C. A machine learning approach utilizing DNA methylation as an accurate classifier of COVID-19 disease severity (2022) Scientific Reports, 12 (1), art. no. 17480, .
• S Bowler, G Papoutsoglou, A Karanikas, I Tsamardinos, MJ Corley, L Ndhlovu, Machine Learning Analysis of DNA Methylation in COVID-19 Disease, Topics in Antiviral Medicine, 75-76, 2022
• Doxa A, Almpanidou V, Katsanevakis S, Queirós A, Kaschner K, Garilao C, Kesner‐Reyes K, Mazaris AD (2022) 4D marine conservation networks: Combining 3D prioritization of present and future biodiversity with climatic refugia, Global Change Biology 28 (15), 4577-4588
• Doxa, A., Kamarianakis, Y., Mazaris, A.D. Spatial heterogeneity and temporal stability characterize future climatic refugia in Mediterranean Europe (2022) Global Change Biology, 28 (7), pp. 2413-2424.
• M Fasoulakis, E Markakis, Y Pantazis, C Varsos, Forward looking best-response multiplicative weights update methods for bilinear zero-sum games, International Conference on Artificial Intelligence and Statistics, 11096-11117, 2022
• A Fayomi, Y Pantazis, M Tsagris, ATA Wood, Cauchy robust principal component analysis with applications to high-deimensional data sets, arXiv preprint arXiv:2211.03181, 2022.
• M Fasoulakis, E Markakis, Y Pantazis, C Varsos (2022) Forward looking best-response multiplicative weights update methods for bilinear zero-sum games, International Conference on Artificial Intelligence and Statistics, 11096-11117.
• Giovos I, Katsada D, Spyridopoulou RNA, Poursanidis D, Doxa A, Katsanevakis S, Periklis Kleitou P, Vasiliki Oikonomou V, Vasileios Minasidis V, Ayaka A Ozturk AA, Dimitra Petza D, Maria Sini M, Cahide Cigdem Yigin CC, Meyers E, Barker J, Jiménez-Alvarado D, Hood AR (2022) Strengthening angel shark conservation in the northeastern Mediterranean Sea, Journal of Marine Science and Engineering 10 (2), 269
• H Gu, P Birmpa, Y Pantazis, L Rey-Bellet, MA Katsoulakis, Lipschitz regularized gradient flows and latent generative particles, arXiv preprint arXiv:2210.17230, 2022.
• A Jamal, A Tzavaras Y Kamarianakis, Y Pantazis, E Kalligiannaki, T Katsaounis, K Kotsovos, I Gereige, M Abdullah, Efficiency evaluation and comparisons of solar cell technologies based on measurements from the Arabian peninsula, EuroSun, 1755-1766, 2022 (html file)
• A Jamal, A Tzavaras, Y Kamarianakis, Y Pantazis, E Kalligiannaki, TD Katsaounis, K Kotsovos, I Gereige, M Abdullah (2022) KNN-based ensembles for day-ahead solar power output forecasting, EuroSun, pp. 1755-1766.
• I Kakogeorgiou, S Gidaris, B Psomas, Y Avrithis, A Bursuc, K Karantzalos, N Komodakis, What to hide from your students: Attention-guided masked image modeling, European Conference on Computer Vision, 300-318, 2022 (pdf file)
• Kamarianakis,Y., Pantazis, Y., Kalligiannaki, E., Kotsovos, K., Gereige, I., Abdullah, M., Tzavaras, A., Katsaounis,T., Day-ahead forecasting of solar irradiance: KNN-based ensembles, 8th World Conference on Photovoltaic Energy Conversion, 2022. (pdf file)
• Y Kamarianakis, Y Pantazis, E Kalligiannaki, TD Katsaounis, K Kotsovos, … (2022) Day-Ahead Forecasting of Solar Irradiance & PV Power Output Through Statistical Machine Learning Methods, Saudi Arabia Smart Grid (SASG), 1-5.
• Karagiannaki, I., Gourlia, K., Lagani, V., Pantazis, Y., Tsamardinos, I. Learning biologically-interpretable latent representations for gene expression data: Pathway Activity Score Learning Algorithm (2022) Machine Learning, .
• Karaglani, M., Panagopoulou, M., Baltsavia, I., Apalaki, P., Theodosiou, T., Iliopoulos, I., Tsamardinos, I., Chatzaki, E. Tissue‐Specific Methylation Biosignatures for Monitoring Diseases: An In Silico Approach (2022) International Journal of Molecular Sciences, 23 (6), art. no. 2959, .
• Karaglani, M., Panagopoulou, M., Cheimonidi, C., Tsamardinos, I., Maltezos, E., Papanas, N., Papazoglou, D., Mastorakos, G., Chatzaki, E. Liquid Biopsy in Type 2 Diabetes Mellitus Management: Building Specific Biosignatures via Machine Learning (2022) Journal of Clinical Medicine, 11 (4), art. no. 1045,.
• T Katsaounis Y Kamarianakis, Y Pantazis, E Kalligiannaki, K Kotsovos, I Gereige, M Abdullah, A Tzavaras (2022) Day-ahead forecasting of solar irradiance: KNN-based ensembles, 8th World Conference on Photovoltaic Energy Conversion.
• T KatsaounisY Pantazis, E Kalligiannaki, Y Kamarianakis, K Kotsovos, I Gereige, M Abdullah, A Jamal, A Tzavaras, Efficiency evaluation and comparisons of solar cell technologies based on measurements from the Arabian peninsula, EuroSun2022: ISES and IEA SHC International Conference on Solar Energy for Buildings and Industry, 2022
• Kominis, I.K., Loulakis, M. Quantum advantage in biometric authentication with single photons (2022) Journal of Applied Physics, 131 (8), art. no. 084401.
• I Kominis, M Loulakis, Quantum biometric identification of ultrahigh security based on the quantum statistics of photodetection by the human retina, US Patent 11,275,937, 2022
• I Kominis, M Loulakis, ÖE Müstecaplıoglu, Quantum biometrics, Recent Advances in Biometrics 131, 2022
• A Konsta, A Chatzimentor, M Lin, C Dimitriadis, A Kyprioti, M Liu, S Li, A Doxa, A Mazaris (2022) Marine heatwaves threaten key foraging grounds of sea turtles in Southeast Asian Seas, Regional Environmental Change 22 (3), 97
• A Kyprioti, A Doxa, V Almpanidou, A Mazaris (2022) Assessing 3-D climatic stability of world’s marine protected areas, https://doi.org/10.21203/rs.3.rs-2025730/v1
• L Lastilla, S Ammirati, D Firmani, N Komodakis, P Merialdo, S Scardapane, Self-supervised learning for medieval handwriting identification: A case study from the Vatican Apostolic Library, Information Processing & Management 59 (3), 102875, 2022
• I Marinescu, S Triantafillou, K Kording, Regression discontinuity threshold optimization, Plos one 17 (11), e0276755, 2022
• M Markaki, I Tsamardinos, A Langhammer, V Lagani, K Hveem, OD Roe, A validated clinical risk prediction model for lung cancer in smokers of all ages and exposure types: A HUNT study (vol 31, pg 36, 2018) EBIOMEDICINE 82, 2022
• M Markaki, I Tsamardinos, A Langhammer, V Lagani, K Hveem, OD Røe, Corrigendum to “A validated clinical risk prediction model for lung cancer in smokers of all ages and exposure types: A HUNT study”[EBioMedicine 31 (2018) 36–46], EBioMedicine 82, 2022
• Marshall, J.L., Peshkin, B.N., Yoshino, T., Vowinckel, J., Danielsen, H.E., Melino, G., Tsamardinos, I., Haudenschild, C., Kerr, D.J., Sampaio, C., Rha, S., FitzGerald, K.T., Holland, E.C., Gallagher, D., Garcia-Foncillas, J., Juhl, H. The Essentials of Multiomics (2022) Oncologist, 27 (4), pp. 272-284. I Marinescu, S Triantafillou, K Kording (2022) Regression discontinuity threshold optimization, Plos one 17 (11), e0276755
• OTD Nguyen, I Fotopoulos, TH Nøst, M Markaki, V Lagani, I Tsamardinos, OD Røe, MA11. 04 Genetic Variants of HUNT Lung Cancer Model Improve Lung Cancer Risk Assessment Over Clinical Models, Journal of Thoracic Oncology 17 (9), S81, 2022.
• Y Pantazis, E Kalligiannaki, Y Kamarianakis, K Kotsovos, I Gereige, M Abdullah, A Jamal, A Tzavaras, T Katsaounis, Efficiency Evaluation and Comparisons of Solar Cell Technologies Based on Measurements from the Arabian Peninsula, 2022.
• Pantazis, Y., Paul, D., Fasoulakis, M., Stylianou, Y., Katsoulakis, M.A. Cumulant GAN (2022) IEEE Transactions on Neural Networks and Learning Systems, https://par.nsf.gov/servlets/purl/10356226
• P Petsas, A Doxa, V Almpanidou, A Mazaris (2022) Global patterns of sea surface climate connectivity for marine species, Communications Earth & Environment 3 (1), 240
• Petsas P, Doxa A, Almpanidou V, Mazaris AD (2022) Ocean climate connectivity and the future range shifts of marine biodiversity, https://doi.org/10.21203/rs.3.rs-1043050/v1
• Plakandaras, V., Gogas, P., Papadimitriou, T., Tsamardinos, I. Credit Card Fraud Detection with Automated Machine Learning Systems (2022) Applied Artificial Intelligence, 36 (1), art. no. 2086354,
• OD Røe, I Fotopoulos, OTD Nguyen, TH Nøst, M Markaki, V Lagani, R Mjelle, TM Sandanger, P Sætrom, I Tsamardinos (2022) EP01. 01-009 Common MicroRNAs in Pre-diagnostic Serum Associated with Lung Cancer in Two Cohorts up to Eight Years Before Diagnosis: A HUNT Study, Journal of Thoracic Oncology 17 (9), S164
• V Talisa, F Shah, CC Chang, C Seymour, L Tang, J Kennedy, S Triantafyllou, G Cooper, K DeMerle, F Mayr, D Yealy, A Higgins, S Peake, R Bellomo, D Harrison, P Mouncey, K Rowan, D Angus, S Yende (2022) 1191: HETEROGENEITY IN RESPONSE TO EARLY GOAL-DIRECTED THERAPY IN SEPSIS, Critical Care Medicine 51 (1), 594-594
• GV Thomaidis, S Michos, K Papadimitriou, E Chartampilas, I Tsamardinos, Identifying Bipolar patients from controls, using post-mortem cerebellum gene expression data and fully Automated Machine Learning, medRxiv, 2022.01. 22.22269384, 2022
• Tsagris, M., Papadovasilakis, Z., Lakiotaki, K., Tsamardinos, I. The γ-OMP Algorithm for Feature Selection With Application to Gene Expression Data (2022) IEEE/ACM Transactions on Computational Biology and Bioinformatics, 19 (2), pp. 1214-1224.
• Tsamardinos, I. Don’t lose samples to estimation (2022) Patterns, 3 (12), art. no. 100612, .
• Tsamardinos, I., Charonyktakis, P., Papoutsoglou, G., Borboudakis, G., Lakiotaki, K., Zenklusen, J.C., Juhl, H., Chatzaki, E., Lagani, V. Just Add Data: automated predictive modeling for knowledge discovery and feature selection (2022) npj Precision Oncology, 6 (1), art. no. 38, .
• Tsourtis, A., Papoutsoglou, G., Pantazis, Y. GAN-Based Training of Semi-Interpretable Generators for Biological Data Interpolation and Augmentation (2022) Applied Sciences (Switzerland), 12 (11), art. no. 5434, .
• A. Tzavaras Y. Kamarianakis, Y. Pantazis, E. Kalligiannaki, K. Kotsovos, I. Gereige, M. Abdullah, Day-Ahead Forecasting of Solar Irradiance: KNN-Based Ensembles, 8th World Conference on Photovoltaic Energy Conversion, 2022
• A. Tzavaras Y. Pantazis, E. Kalligiannaki, Y. Kamarianakis, K. Kotsovos, I. Gereige, M. Abdullah (2022) Performance Evaluation and Comparison of Solar Cell Technologies Based on Historical Data, 39th European Photovoltaic Solar Energy Conference and Exhibition (EUPVSEC2022), 8th World Conference on Photovoltaic Energy Conversion (8th WCPEC) pp. 691-694.

• Agrapetidou, A., Charonyktakis, P., Gogas, P., Papadimitriou, T., Tsamardinos, I. An AutoML application to forecasting bank failures (2021) Applied Economics Letters, 28 (1), pp. 5-9.
• Almpanidou V, Doxa A, Mazaris AD (2021) Combining a cumulative risk index and species distribution data to identify priority areas for marine biodiversity conservation in the Black Sea, Ocean & Coastal Management 213, 105877.
• J Birrell, MA Katsoulakis, Y Pantazis, D Paul, A Tsourtis (2021) A Variance Reduction Method for Neural-based Divergence Estimation
• Borboudakis, G., Tsamardinos, I. Extending greedy feature selection algorithms to multiple solutions (2021) Data Mining and Knowledge Discovery, 35 (4), pp. 1393-1434.
• Chatzimentor A, Almpanidou V, Doxa A, Dimitriadis C, Mazaris AD (2021) Projected redistribution of sea turtle foraging areas reveals important sites for conservation, Climate Change Ecology 2, 100038.
• K Gourlia, M Markaki, C Papadaki, K Rounis, E Vorrias, E Prokova, E Lagoudaki, A Koutsopoulos, I Tsamardinos, D Mavroudis, S Agelaki (2021) MicroRNA Expression Analysis and Biological Pathways in Chemoresistant Non-Small Cell Lung Cancer, MDPI
• A Klimova, A Boukhanovsky, A Bilas, V Harmandaris, E Kalligiannaki, E Kanellou (2021) Social Network open data revealing for identification of citizens activities on Urban Environment Objects, TRANSFORMATION 285 (294).
• Marcos-Zambrano, L.J., Karaduzovic-Hadziabdic, K., Loncar Turukalo, T., Przymus, P., Trajkovik, V., Aasmets, O., Berland, M., Gruca, A., Hasic, J., Hron, K., Klammsteiner, T., Kolev, M., Lahti, L., Lopes, M.B., Moreno, V., Naskinova, I., Org, E., Paciência, I., Papoutsoglou, G., Shigdel, R., Stres, B., Vilne, B., Yousef, M., Zdravevski, E., Tsamardinos, I., Carrillo de Santa Pau, E., Claesson, M.J., Moreno-Indias, I., Truu, J., Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment (2021) Frontiers in Microbiology, 12, art. no. 634511.
• V Marsocci, S Scardapane, N Komodakis (2021) MARE: Self-supervised multi-attention REsu-Net for semantic segmentation in remote sensing, Remote Sensing 13 (16), 3275
• Monnet AC, Cilleros K, Médail F, Albassatneh MC, Arroyo J, Bacchetta G, Bagnoli F, Barina Z, Cartereau M, Casajus N, Dimopoulos P, Domina G, Doxa A, Escudero M, Fady B, Hampe A, Matevski V, Misfud S, Nikolic T, Pavon D, Roig A, Barea ES, Spanu I, Strid A, Vendramin GG, Leriche A (2021) WOODIV, a database of occurrences, functional traits, and phylogenetic data for all Euro-Mediterranean trees, Scientific Data 8, 89. https://doi.org/10.1038/s41597-021-00873-3
• Myrtakis, N., Tsamardinos, I., Christophides, V. (2021) PROTEUS: Predictive explanation of anomalies, Proceedings – International Conference on Data Engineering, 2021-April, art. no. 9458931, pp. 1967-1972.
• N Myrtakis, I Tsamardinos, V Christophides (2021) On Predictive Explanation of Data Anomalies, arXiv preprint arXiv:2110.09467
• Nissen, L.R., Tsamardinos, I., Eskelund, K., Gradus, J.L., Andersen, S.B., Karstoft, K.-I. Forecasting military mental health in a complete sample of Danish military personnel deployed between 1992-2013 (2021) Journal of Affective Disorders, 288, pp. 167-174.
• Panagopoulou, M., Karaglani, M., Manolopoulos, V.G., Iliopoulos, I., Tsamardinos, I., Chatzaki, E. Deciphering the methylation landscape in breast cancer: Diagnostic and prognostic biosignatures through automated machine learning (2021) Cancers, 13 (7), art. no. 1677, .
• Planell, N., Lagani, V., Papadogiorgaki, M., Venianaki, M., Charonyktakis, P., Antonakakis, M., Tsamardinos, I., Zervakis, M.E., Sakkalis, V. Heart Rate Classification Using ECG Signal Processing and Machine Learning Methods (2021) BIBE 2021 – 21st IEEE International Conference on BioInformatics and BioEngineering, Proceedings, pp. 1-6.
• A Papapantoleon, P Yanez Sarmiento (2021) Detection of arbitrage opportunities in multi-asset derivatives markets, Dependence Modeling 9 (1), 439-459.
• Papoutsoglou, G., Karaglani, M., Lagani, V., Thomson, N., Røe, O.D., Tsamardinos, I., Chatzaki, E. Automated machine learning optimizes and accelerates predictive modeling from COVID-19 high throughput datasets (2021) Scientific Reports, 11 (1), art. no. 15107, .
• Paul, D., Mukherjee, S., Pantazis, Y., Stylianou, Y. A universal multi-speaker multi-style text-to-speech via disentangled representation learning based on Rényi divergence minimization (2021) Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH, 5, pp. 3541-3545.
• N Planell, V Lagani, P Sebastian-Leon, F van der Kloet, E Ewing, N Karathanasis, A Urdangarin, I Arozarena, M Jagodic, I Tsamardinos, S Tarazona, A Conesa, J Tegner, D Gomez-Cabrero (2021) STATegra: multi-omics data integration–a conceptual scheme with a bioinformatics pipeline, Frontiers in genetics 12, 620453
• Rounis, K., Makrakis, D., Papadaki, C., Monastirioti, A., Vamvakas, L., Kalbakis, K., Gourlia, K., Xanthopoulos, I., Tsamardinos, I., Mavroudis, D., Agelaki, S. Prediction of outcome in patients with non-small cell lung cancer treated with second line PD-1/PDL-1 inhibitors based on clinical parameters: Results from a prospective, single institution study (2021) PLoS ONE, 16 (6 June), art. no. e0252537, .
• Sebastian-Leon, P., van der Kloet, F., Ewing, E., Karathanasis, N., Urdangarin, A., Arozarena, I., Jagodic, M., Tsamardinos, I., Tarazona, S., Conesa, A., Tegner, J., Gomez-Cabrero, D. STATegra: Multi-Omics Data Integration – A Conceptual Scheme With a Bioinformatics Pipeline (2021) Frontiers in Genetics, 12, art. no. 620453.
• Tsourtis, A., Papoutsoglou, G., Pantazis, Y. (2021) Efficient discrimination between biological populations via neural-based estimation of RÉnyi divergence, UNCECOMP Proceedings, 2021-June.

• K Biza, I Tsamardinos, S Triantafillou (2020) Tuning causal discovery algorithms, International Conference on Probabilistic Graphical Models, 17-28
• Chatzaki, E., Tsamardinos, I. Somatic copy number aberrations detected in circulating tumor DNA can hold diagnostic value for early detection of hepatocellular carcinoma (2020) EBioMedicine, 57, art. no. 102851.
• G Chatzinikolaou, K Stratigi, K Agathangelou, M Tsekrekou, E Goulielmaki, O Chatzidoukaki, K Gkirtzimanaki, T Aid-Pavlidis, M Aivaliotis, P Pavlidis, I Tsamardinos, P Topalis, BBouwman, N Crosetto, J Altmüller, G Garinis (2020) ERCC1-XPF Interacts with Topoisomerase IIβ to Facilitate the Repair of Activity-induced DNA Breaks, bioRxiv, 2020.01. 03.892703
• A Chazirakis, V Kirieri, IM Sarris, E Kalligiannaki, V Harmandaris (2020) Neural Network Potential Surfaces: A Comparison of two Approaches, Procedia Computer Science 178, 345-354.
• Cheliotis, D., Kontoyiannis, I., Loulakis, M., Toumpis, S. A simple network of nodes moving on the circle (2020) Random Structures and Algorithms, 57 (2), pp. 317-338.
• Cho, N., El Asmar, M., Underwood, S., Kamarianakis, Y.,  Long-Term Performance Benefits of the Design-Build Delivery Method Applied to Road Pavement Projects in the U.S. (2020) KSCE Journal of Civil Engineering, 24 (4), pp. 1049-1059.
• Doxa A, Devictor V, Baumel A, Pavon D, Medail F, Leriche A (2020) Beyond taxonomic diversity: Revealing spatial mismatches in phylogenetic and functional diversity facets in Mediterranean tree communities in southern France, Forest Ecology and Management 474, 118318.
• Doxa A, Prastacos P (2020) Using Rao’s quadratic entropy to define environmental heterogeneity priority areas in the European Mediterranean biome, Biological Conservation 241, 108366.
• Dupuis, P., Katsoulakis, M.A., Pantazis, Y., Rey-Bellet, L., (2020) Sensitivity analysis for rare events based on rényi divergence (2020) Annals of Applied Probability, 30 (4), pp. 1507-1533.
• S Fafalios, P Charonyktakis, I Tsamardinos (2020) Gradient Boosting Trees, Gnosis Data Analysis PC, 1-3
• Giacomazzo, M., Kamarianakis, Y., Bayesian estimation of subset threshold autoregressions: short-term forecasting of traffic occupancy (2020) Journal of Applied Statistics, 47 (13-15), pp. 2658-2689.
• D Gomez-Cabrero, S Tarazona, I Ferreirós-Vidal, RN Ramirez, A Schmidt, T Reijmers, V Von Saint Paul, F Marabita, J Rodríguez-Ubreva, A Garcia-Gomez, T Carroll, L Cooper, Z Liang, G Dharmalingam, F van der Kloet, A Harms, L Balzano-Nogueira, V Lagani, I Tsamardinos, M Lappe, D Maier, J Westerhuis, T Hankemeier, A Imhof, E Ballestar, A Mortazavi, M Merkenschlager, J Tegner, A Conesa (2020) Metadata record for: STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse, figshare
• T Jin, A Chazirakis, E Kalligiannaki, V Harmandaris, MA Katsoulakis (2020) Data-driven uncertainty quantification for systematic coarse-grained models, Soft Materials 18 (2-3), 348-368.
• Karagiannaki, I., Pantazis, Y., Chatzaki, E., Tsamardinos,I., Pathway Activity Score Learning for Dimensionality Reduction of Gene Expression Data (2020) Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 12323 LNAI, pp. 246-261.
• I Karagiannaki, Y Pantazis, E Chatzaki, I Tsamardinos (2020) Pathway activity score learning for dimensionality reduction of gene expression data, Discovery Science: 23rd International Conference, DS 2020, Thessaloniki, Greece, October 19–21, 2020, Proceedings 23, pp. 246-261
• Karaglani, M., Gourlia, K., Tsamardinos, I., Chatzaki, E. Accurate blood-based diagnostic biosignatures for alzheimer’s disease via automated machine learning (2020) Journal of Clinical Medicine, 9 (9), art. no. 3016, pp. 1-14.
• Karstoft, K.-I., Tsamardinos, I., Eskelund, K., Andersen, S.B., Nissen, L.R,. Applicability of an automated model and parameter selection in the prediction of screening-level PTSD in Danish soldiers following deployment: Development study of transferable predictive models using automated machine learning (2020) JMIR Medical Informatics, 8 (7), art. no. e17119,.
• Malliaraki, N., Lakiotaki, K., Vamvoukaki, R., Notas, G., Tsamardinos, I., Kampa, M., Castanas, E. Translating vitamin D transcriptomics to clinical evidence: Analysis of data in asthma and chronic obstructive pulmonary disease, followed by clinical data meta-analysis (2020) Journal of Steroid Biochemistry and Molecular Biology, 197, art. no. 105505.
• Nikoloudakis, N., Stagakis, S., Mitraka, Z., Kamarianakis, Y., Chrysoulakis, N. Spatial interpolation of urban air temperatures using satellite-derived predictors (2020) Theoretical and Applied Climatology, 141 (1-2), pp. 657-672.
• Pantazis, Y., Tselas, C., Lakiotaki, K., Lagani, V., Tsamardinos, I. Latent Feature Representations for Human Gene Expression Data Improve Phenotypic Predictions (2020) Proceedings – 2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020, art. no. 9313286, pp. 2505-2512.
• Paul, D., Shifas, M.P.V., Pantazis, Y., Stylianou, Y. Enhancing speech intelligibility in text-to-speech synthesis using speaking style conversion (2020) Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH, 2020-October, pp. 1361-1365.
• Paul, D., Pantazis, Y., Stylianou, Y. (2020) Speaker conditional WaveRNN: Towards universal neural vocoder for unseen speaker and recording conditions, Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH, 2020-October, pp. 235-239.
• D Paul, MPV Shifas, Y Pantazis, Y Stylianou (2020) Enhancing Speech Intelligibility in Text-To-Speech Synthesis using Speaking Style Conversion, INTERSPEECH, 1361-1365
• OD Røe, M Markaki, I Tsamardinos, V Lagani, OTD Nguyen, JH Pedersen, Z Saghir, HG Ashraf (2020) ‘Reduced’ HUNT model outperforms NLST and NELSON study criteria in predicting lung cancer in the Danish screening trial, BMJ open respiratory research 6 (1), e000512
• Simantiraki, O., Cooke, M., Pantazis, Y., Effects of Spectral Tilt on Listeners’ Preferences and Intelligibility (2020) ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing – Proceedings, 2020-May, art. no. 9054117, pp. 6254-6258.
• M Tsagris, Z Papadovasilakis, K Lakiotaki, I Tsamardinos (2020) The gamma-OMP Algorithm for Feature Selection With Application to Gene Expression Data, IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (2), 1214-1224.
• Tsamardinos, I., Fanourgakis, G.S., Greasidou, E., Klontzas, E., Gkagkas, K., Froudakis, G.E. An Automated Machine Learning architecture for the accelerated prediction of Metal-Organic Frameworks performance in energy and environmental applications (2020) Microporous and Mesoporous Materials, 300, art. no. 110160.
• A Tsourtis, Y Pantazis, I Tsamardinos (2020) Inference of Stochastic Dynamical Systems from Cross-Sectional Population Data, arXiv preprint arXiv:2012.05055
• Velli, M.-C., Tsibidis, G.D., Mimidis, A., Skoulas, E., Pantazis, Y., Stratakis, E. Predictive modeling approaches in laser-based material processing (2020) Journal of Applied Physics, 128 (18), art. no. 018235.
• Vernardos, G., Tsagkatakis, G., Pantazis, Y., Quantifying the structure of strong gravitational lens potentials with uncertainty-aware deep neural networks (2020) Monthly Notices of the Royal Astronomical Society, 499 (4), pp. 5641-5652.
• Verrou, K.-M., Tsamardinos, I., Papoutsoglou, G. Learning Pathway Dynamics from Single-Cell Proteomic Data: A Comparative Study (2020) Cytometry Part A, 97 (3), pp. 241-252.
• Xanthopoulos, I., Tsamardinos, I., Christophides, V., Simon, E., Salinger, A. Putting the human back in the AutoML loop (2020) EDBT/ICDT Workshops, CEUR Workshop Proceedings, 2578.

• Adamou, M., Antoniou, G., Greasidou, E., Lagani, V., Charonyktakis, P., Tsamardinos, I., Doyle, M. Toward Automatic Risk Assessment to Support Suicide Prevention (2019) Crisis, 40 (4), pp. 249-256.
• N Adiga, Y Pantazis, V Tsiaras, Y Stylianou (2019) Speech Enhancement for Noise-Robust Speech Synthesis Using Wasserstein GAN, INTERSPEECH, 1821-1825
• T Asvestopoulou, V Manousaki, A Psistakis, E Nikolli, V Andreadakis, IM Aslanides, Y Pantazis, I Smyrnakis, M Papadopouli, Towards a robust and accurate screening tool for dyslexia with data augmentation using GANs, 2019 IEEE 19th International Conference on Bioinformatics and Bioengineering (BIBE) pp. 775-782
• G Baxevani, E Kalligiannaki, V Harmandaris (2019) Study of the transient dynamics of coarse-grained molecular systems with the path-space force-matching method, Procedia Computer Science 156, 59-68.
• Borboudakis and I. Tsamardinos (2019) Forward-backward selection with early dropping. The Journal of Machine Learning Research, 20 (1), 276-314.
• A.J. Brazel, Y. Kamarianakis, X. Li, B.L. Turner (2019) On the effects of landscape configuration on summer diurnal temperatures in urban residential areas: application in Phoenix, AZ, Frontiers of Earth Science, Vol. 13 (3), pp. 445-463.
• Ewing, E., Kular, L., Fernandes, S.J., Karathanasis, N., Lagani, V., Ruhrmann, S., Tsamardinos, I., Tegner, J., Piehl, F., Gomez-Cabrero, D., Jagodic, M. Combining evidence from four immune cell types identifies DNA methylation patterns that implicate functionally distinct pathways during Multiple Sclerosis progression (2019) EBioMedicine, 43, pp. 411-423.
• Fernandes, S.J., Morikawa, H., Ewing, E., Ruhrmann, S., Joshi, R.N., Lagani, V., Karathanasis, N., Khademi, M., Planell, N., Schmidt, A., Tsamardinos, I., Olsson, T., Piehl, F., Kockum, I., Jagodic, M., Tegnér, J., Gomez-Cabrero, D. Non-parametric combination analysis of multiple data types enables detection of novel regulatory mechanisms in T cells of multiple sclerosis patients (2019) Scientific Reports, 9 (1), art. no. 11996.
• Ferreirós-Vidal, I., Carroll, T., Zhang, T., Lagani, V., Ramirez, R.N., Ing-Simmons, E., Gómez-Valadés, A.G., Cooper, L., Liang, Z., Papoutsoglou, G., Dharmalingam, G., Guo, Y., Tarazona, S., Fernandes, S.J., Noori, P., Silberberg, G., Fisher, A.G., Tsamardinos, I., Mortazavi, A., Lenhard, B., Conesa, A., Tegner, J., Merkenschlager, M., Gomez-Cabrero, D. Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation (2019) PLoS Biology, 17 (4), art. no. e2006506.
• Gomez-Cabrero, D., Tarazona, S., Ferreirós-Vidal, I., Ramirez, R.N., Company, C., Schmidt, A., Reijmers, T., Paul, V.S., Marabita, F., Rodríguez-Ubreva, J., Garcia-Gomez, A., Carroll, T., Cooper, L., Liang, Z., Dharmalingam, G., van der Kloet, F., Harms, A.C., Balzano-Nogueira, L., Lagani, V., Tsamardinos, I., Lappe, M., Maier, D., Westerhuis, J.A., Hankemeier, T., Imhof, A., Ballestar, E., Mortazavi, A., Merkenschlager, M., Tegner, J., Conesa, A. STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse (2019) Scientific Data, 6 (1), art. no. 256.
• V Harmandaris, E Kalligiannaki, M Katsoulakis (2019) Systematic Coarse-Grained Models for Molecular Systems Using Entropy, Proceedings of 5th International Electronic Conference on Entropy and Its Applications doi:10.3390/ecea-5-06710
• E Kalligiannaki, V Harmandaris, M Katsoulakis (2019) Systematic Coarse-Grained Models for Molecular Systems Using Entropy, Proceedings 60 (1), 27.
• GT Kossioris, M Loulakis, PE Souganidis (2019) The deterministic and stochastic shallow lake problem, Probability and Analysis in Interacting Physical Systems: In Honor of SRS Varadhan, pp. 49-74
• Kyriakis, D., Kanterakis, A., Manousaki, T., Tsakogiannis, A., Tsagris, M., Tsamardinos, I., Papaharisis, L., Chatziplis, D., Potamias, G., Tsigenopoulos, C.S. Scanning of genetic variants and genetic mapping of phenotypic traits in gilthead seabream through ddRAD sequencing (2019) Frontiers in Genetics, 10 (JUN), art. no. 675.
• Lakiotaki, K., Georgakopoulos, G., Castanas, E., Røe, O.D., Borboudakis, G., Tsamardinos, I., A data driven approach reveals disease similarity on a molecular level (2019) npj Systems Biology and Applications, 5 (1), art. no. 39.
• Loos, M.S., Ramakrishnan, R., Vranken, W., Tsirigotaki, A., Tsare, E.-P., Zorzini, V., De Geyter, J., Yuan, B., Tsamardinos, I., Klappa, M., Schymkowitz, J., Rousseau, F., Karamanou, S., Economou, A. Structural basis of the subcellular topology landscape of Escherichia coli (2019) Frontiers in Microbiology, 10, art. no. 1670, pp. 1-22.
• M Loulakis, MG Stamatakis (2019) Generalized Young measures and the hydrodynamic limit of condensing zero range processes, arXiv preprint arXiv:1910.00493
• T Lux, A Papapantoleon (2019) Model-free bounds on Value-at-Risk using extreme value information and statistical distances. Insurance: Mathematics and Economics 86, 73-83.
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