COMPUTATIONAL & DATA SCIENCE PREPRINT REPOSITORY

A Doxa, C Adam, N Nagkoulis, AD Mazaris, S Katsanevakis (2025) prior3D: An R package for three-dimensional conservation prioritization, Ecological Modelling 499, 110919.
K Ellrott, CK Wong, C Yau, MAA Castro, JA Lee, BJ Karlberg, JK Grewal, V Lagani, B Tercan, V Friedl, T Hinoue, V Uzunangelov, L Westlake, X Loinaz, I Felau, PI Wang, A Kemal, SJ Caesar-Johnson, I Shmulevich, AJ Lazar, I Tsamardinos,... (2025) Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets, Cancer Cell (pdf file)
E Georgoulis, MA Zervou, Y Pantazis (2025) Transfer Learning on Protein Language Models Improves Antimicrobial Peptide Classification, https://doi.org/10.21203/rs.3.rs-5768912/v1
G Grekas, K Koumatos, C Makridakis, A Vikelis (2025) Convergence of Discontinuous Galerkin Methods for Quasiconvex and Relaxed Variational Problems, arXiv preprint arXiv:2501.11944
G Grekas, K Koumatos, C Makridakis, A Vikelis (2025) A class of discontinuous Galerkin methods for nonlinear variational problems, Mathematics of Computation (pdf)
G Grekas, CG Makridakis (2025) Deep Ritz - Finite element methods: Neural network methods trained with finite elements, Computer Methods in Applied Mechanics and Engineering, Vol. 437, 117798, https://doi.org/10.1016/j.cma.2025.117798
K Konsta, A Doxa, S Katsanevakis, AD Mazaris (2025) Projected marine heatwaves over the Mediterranean Sea and the network of marine protected areas: a three-dimensional assessment, Climatic Change 178 (2), 1-20.
O Simantiraki, M Markaki, Y Pantazis (2025) Dynamic Speech Generation to Enhance Intelligibility in Noisy Environments, ICASSP 2025-2025 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), Hyderabad, India, 2025, pp. 1-5, doi: 10.1109/ICASSP49660.2025.10887886

G Akrivis, C Makridakis, On maximal regularity estimates for discontinuous Galerkin time-discrete methods, SIAM Journal on Numerical Analysis 60 (1), 180-194, 2022 (pdf file)
G Akrivis, CG Makridakis, A posteriori error estimates for Radau IIA methods via maximal parabolic regularity, Numerische Mathematik 150 (3), 691-717, 2022 (html file)
L Banjai, C Makridakis, A posteriori error analysis for approximations of time-fractional subdiffusion problems, Mathematics of Computation 91 (336), 1711-1737, 2022 (html file).
J Birrell, P Dupuis, MA Katsoulakis, Y Pantazis, L Rey-Bellet, (f,Gamma)-Divergences: Interpolating between f-Divergences and Integral Probability Metrics, Journal of Machine Learning Research, 2022(html file)
J Birrell, MA Katsoulakis, Y Pantazis, Optimizing variational representations of divergences and accelerating their statistical estimation, IEEE Transactions on Information Theory, 2022 (html file)
K Biza, I Tsamardinos, S Triantafillou, Out-of-sample tuning for causal discovery, IEEE Transactions on Neural Networks and Learning Systems, 2022 (html file)
S Bowler, G Papoutsoglou, A Karanikas, I Tsamardinos, MJ Corley, L Ndhlovu, A machine learning approach utilizing DNA methylation as an accurate classifier of COVID-19 disease severity, Scientific Reports 12 (1), 17480, 2022 (html file)
S Bowler, G Papoutsoglou, A Karanikas, I Tsamardinos, MJ Corley, L Ndhlovu, Machine Learning Analysis of DNA Methylation in COVID-19 Disease, Topics in Antiviral Medicine, 75-76, 2022 (html file)
A Doxa, Y Kamarianakis, AD Mazaris, Spatial heterogeneity and temporal stability characterize future climatic refugia in Mediterranean Europe, Global Change Biology 28 (7), 2413-2424, 2022 (html file)
M Fasoulakis, E Markakis, Y Pantazis, C Varsos, Forward looking best-response multiplicative weights update methods for bilinear zero-sum games, International Conference on Artificial Intelligence and Statistics, 11096-11117, 2022 (html file)
A Fayomi, Y Pantazis, M Tsagris, ATA Wood, Cauchy robust principal component analysis with applications to high-deimensional data sets, arXiv preprint arXiv:2211.03181, 2022.
G Grekas, K Koumatos, C Makridakis, P Rosakis, Approximations of Energy Minimization in Cell-Induced Phase Transitions of Fibrous Biomaterials: -Convergence Analysis, SIAM Journal on Numerical Analysis 60 (2), 715-750, 2022 (pdf file)
H Gu, P Birmpa, Y Pantazis, L Rey-Bellet, MA Katsoulakis, Lipschitz regularized gradient flows and latent generative particles, arXiv preprint arXiv:2210.17230, 2022.
A Jamal A Tzavaras Y Kamarianakis, Y Pantazis, E Kalligiannaki, T Katsaounis, K Kotsovos, I Gereige, M Abdullah, Efficiency evaluation and comparisons of solar cell technologies based on measurements from the Arabian peninsula, EuroSun, 1755-1766, 2022 (html file)
I Kakogeorgiou, S Gidaris, B Psomas, Y Avrithis, A Bursuc, K Karantzalos, N Komodakis, What to hide from your students: Attention-guided masked image modeling, European Conference on Computer Vision, 300-318, 2022 (pdf file)
C Kalaitzidou, G Grekas, A Zilian, C Makridakis, P Rosakis, Compressive Instabilities Enable Cell-Induced Extreme Densification Patterns in the Fibrous Extracellular Matrix: Discrete Model Predictions, arXiv preprint arXiv:2212.01213, 2022.
Y Kamarianakis, Y Pantazis, E Kalligiannaki, K Kotsovos, I Gereige, M Abdullah, A Tzavaras, T Katsaounis, Day-ahead forecasting of solar irradiance: KNN-based ensembles, 8th World Conference on Photovoltaic Energy Conversion, 2022 (html file)
Y Kamarianakis, Y Pantazis, E Kalligiannaki, T Katsaounis, K Kotsovos, I Gereige, M Abdullah, A Jamal, A Tzavaras, Day-Ahead Forecasting of Solar Irradiance & PV Power Output Through Statistical Machine Learning Methods, 2022 Saudi Arabia Smart Grid (SASG), 1-5, 2022 (pdf file).
I Karagiannaki, K Gourlia, V Lagani, Y Pantazis, I Tsamardinos, Learning biologically-interpretable latent representations for gene expression data: Pathway Activity Score Learning Algorithm, Machine Learning, 1-31, 2022 (html file)
M Karaglani, M Panagopoulou, I Baltsavia, P Apalaki, T Theodosiou, I Iliopoulos, I Tsamardinos, E Chatzaki, Tissue-Specific Methylation Biosignatures for Monitoring Diseases: An In Silico Approach, International Journal of Molecular Sciences 23 (6), 2959, 2022 (html file)
M Karaglani, M Panagopoulou, C Cheimonidi, I Tsamardinos, E Maltezos, N Papanas, D Papazoglou, G Mastorakos, E Chatzaki, Liquid Biopsy in Type 2 Diabetes Mellitus Management: Building Specific Biosignatures via Machine Learning, Journal of Clinical Medicine 11 (4), 1045, 2022 (html file)
T Katsaounis Y Pantazis, E Kalligiannaki, Y Kamarianakis, K Kotsovos, I Gereige, M Abdullah, A Jamal, A Tzavaras, Efficiency evaluation and comparisons of solar cell technologies based on measurements from the Arabian peninsula, EuroSun2022: ISES and IEA SHC International Conference on Solar Energy for Buildings and Industry, 2022 (html file)
I Kominis, M Loulakis, Quantum biometric identification of ultrahigh security based on the quantum statistics of photodetection by the human retina, US Patent 11,275,937, 2022 (html file)
I Kominis, M Loulakis, Quantum advantage in biometric authentication with single photons, Journal of Applied Physics 131 (8) 2022 (html file)
I Kominis, M Loulakis, ÖE Müstecaplıoglu, Quantum biometrics, Recent Advances in Biometrics 131, 2022 (html file)
L Lastilla, S Ammirati, D Firmani, N Komodakis, P Merialdo, S Scardapane, Self-supervised learning for medieval handwriting identification: A case study from the Vatican Apostolic Library, Information Processing & Management 59 (3), 102875, 2022 (html file)
I Marinescu, S Triantafillou, K Kording, Regression discontinuity threshold optimization, Plos one 17 (11), e0276755, 2022 (html file)
M Markaki, I Tsamardinos, A Langhammer, V Lagani, K Hveem, OD Roe, A validated clinical risk prediction model for lung cancer in smokers of all ages and exposure types: A HUNT study (vol 31, pg 36, 2018) EBIOMEDICINE 82, 2022 (html file)
M Markaki, I Tsamardinos, A Langhammer, V Lagani, K Hveem, OD Røe, Corrigendum to “A validated clinical risk prediction model for lung cancer in smokers of all ages and exposure types: A HUNT study”[EBioMedicine 31 (2018) 36–46], EBioMedicine 82, 2022 (html file)
JL Marshall, BN Peshkin, T Yoshino, J Vowinckel, HE Danielsen, G Melino, I Tsamardinos, C Haudenschild, DJ Kerr, C Sampaio, SY Rha, KT FitzGerald, EC Holland, DGallagher, J Garcia-Foncillas, H Juhl, The essentials of multiomics, The oncologist 27 (4), 272-284, 2022 (html file)
OTD Nguyen, I Fotopoulos, TH Nøst, M Markaki, V Lagani, I Tsamardinos, OD Røe, MA11. 04 Genetic Variants of HUNT Lung Cancer Model Improve Lung Cancer Risk Assessment Over Clinical Models, Journal of Thoracic Oncology 17 (9), S81, 2022 (html file)
Y Pantazis, E Kalligiannaki, Y Kamarianakis, K Kotsovos, I Gereige, M Abdullah, A Jamal, A Tzavaras, T Katsaounis, Efficiency Evaluation and Comparisons of Solar Cell Technologies Based on Measurements from the Arabian Peninsula, 2022 (pdf file)
Y Pantazis, D Paul, M Fasoulakis, Y Stylianou, MA Katsoulakis, Cumulant GAN, IEEE Transactions on Neural Networks and Learning Systems, 2022 (html file)
V Plakandaras, P Gogas, T Papadimitriou, I Tsamardinos, Credit card fraud detection with automated machine learning systems, Applied Artificial Intelligence 36 (1), 2086354, 2022 (html file)
OD Roe, I Fotopoulos, OTD Nguyen, TH Nost, M Markaki, V Lagani, R Mjelle, TM Sandanger, P Saetrom, I Tsamardinos, Common MicroRNAs in Pre-diagnostic Serum Associated with Lung Cancer in Two Cohorts up to Eight Years Before Diagnosis: A HUNT Study, 2022 (html file)
OD Røe, I Fotopoulos, OTD Nguyen, TH Nøst, M Markaki, V Lagani, R Mjelle, TM Sandanger, P Sætrom, I Tsamardinos, EP01. 01-009 Common MicroRNAs in Pre-diagnostic Serum Associated with Lung Cancer in Two Cohorts up to Eight Years Before Diagnosis: A HUNT Study, Journal of Thoracic Oncology 17 (9), S164, 2022 (html file)
GV Thomaidis, S Michos, K Papadimitriou, E Chartampilas, I Tsamardinos, Identifying Bipolar patients from controls, using post-mortem cerebellum gene expression data and fully Automated Machine Learning, medRxiv, 2022.01. 22.22269384, 2022 (pdf file)
I Tsamardinos, Don’t lose samples to estimation, Patterns 3 (12) 2022 (html file)
I Tsamardinos, P Charonyktakis, G Papoutsoglou, G Borboudakis, K Lakiotaki, JC Zenklusen, H Juhl, E Chatzaki, V Lagani, Just Add Data: automated predictive modeling for knowledge discovery and feature selection, NPJ precision oncology 6 (1), 38, 2022 (html file)
A Tsourtis, G Papoutsoglou, Y Pantazis, GAN-Based Training of Semi-Interpretable Generators for Biological Data Interpolation and Augmentation, Applied Sciences 12 (11), 5434, 2022 (html file)
A. Tzavaras Y. Kamarianakis, Y. Pantazis, E. Kalligiannaki, K. Kotsovos, I. Gereige, M. Abdullah, Day-Ahead Forecasting of Solar Irradiance: KNN-Based Ensembles, 8th World Conference on Photovoltaic Energy Conversion, 2022 (pdf file)
A. Tzavaras Y. Pantazis, E. Kalligiannaki, Y. Kamarianakis, K. Kotsovos, I. Gereige, M. Abdullah, Performance Evaluation and Comparison of Solar Cell Technologies Based on Historical Data, 39th European Photovoltaic Solar Energy Conference and Exhibition (EUPVSEC2022) 2022 (html file)

Computational & Data Science Preprint Repository